Basic Information
Locus ID:
CH07.3868
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 45249276 | 45254537 | + | CH07.3868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 85,331.88 Da | 65.97 | 63.76 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 708 | 748 | 1.57134E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 706 | 753 | 1.8E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 708 | 754 | 8.48E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 694 | 759 | 1.4E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 709 | 748 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 72 | - | - |
| Coils | Coil | Coil | 78 | 98 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 2.83E-140 |
| RefSeq | XP_025804336.1 | uncharacterized protein LOC112883265 isoform X2 [Panicum hallii] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 9.47E-9 | |
| TrEMBL | A0A2S3GUQ7 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G453800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology