Basic Information
Locus ID:
CH07.3848
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 45093222 | 45104010 | - | CH07.3848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 262,904.63 Da | 41.97 | 79.05 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09279 | RNase_HI_like | 1287 | 1411 | 1.16192E-41 | - |
| CDD | cd00303 | retropepsin_like | 558 | 652 | 3.55563E-12 | - |
| CDD | cd01647 | RT_LTR | 874 | 1054 | 3.28127E-80 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 892 | 1054 | 1.8E-21 | IPR000477 |
| Pfam | PF17921 | Integrase zinc binding domain | 1539 | 1591 | 1.8E-7 | IPR041588 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1119 | 1216 | 1.2E-23 | IPR041577 |
| Pfam | PF00665 | Integrase core domain | 1610 | 1706 | 6.0E-12 | IPR001584 |
| Pfam | PF13456 | Reverse transcriptase-like | 1291 | 1410 | 2.6E-21 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1606 | 1764 | 2.91E-39 | IPR012337 |
| SUPERFAMILY | SSF50630 | Acid proteases | 556 | 657 | 4.87E-9 | IPR021109 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1286 | 1408 | 1.52E-18 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 834 | 1255 | 5.34E-122 | IPR043502 |
| Gene3D | G3DSA:1.10.340.70 | - | 1501 | 1591 | 1.3E-12 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 835 | 979 | 2.1E-61 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1288 | 1418 | 1.7E-26 | IPR036397 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 539 | 671 | 6.7E-17 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 1064 | 1148 | 1.7E-19 | IPR043128 |
| Gene3D | G3DSA:3.10.20.370 | - | 1149 | 1218 | 5.1E-8 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1600 | 1808 | 1.1E-50 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 917 | 1054 | 2.1E-61 | IPR043128 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1283 | 1416 | 11.607849 | IPR002156 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1606 | 1766 | 22.706026 | IPR001584 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 872 | 1054 | 9.285597 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2159 | 2194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1444 | 1468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1973 | 1988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1955 | 1969 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1955 | 2004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1444 | 1481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2157 | 2204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 412 | - | - |
| Coils | Coil | Coil | 401 | 421 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04560.1 | 2.14E-107 | |
| RefSeq | XP_050222931.1 | uncharacterized protein LOC126673022 [Mercurialis annua] | 0 |
| Q99315 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3 | 3.52E-46 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |