Basic Information
Locus ID:
CH07.3787
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 44617991 | 44626608 | - | CH07.3787 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 88,216.36 Da | 44.63 | 66.84 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 521 | 806 | 5.14737E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 690 | 723 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 774 | 806 | 0.059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 599 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 607 | 643 | 1.5E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.5E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 519 | 806 | 6.92E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 659 | 806 | 5.7E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 512 | 658 | 9.1E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 685 | 723 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 726 | 765 | 0.58 | IPR001680 |
| SMART | SM00320 | WD40_4 | 646 | 682 | 9.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 560 | 599 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 557 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 603 | 643 | 6.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 767 | 806 | 8.0E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 567 | 599 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 774 | 806 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 774 | 806 | 12.446495 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 692 | 732 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 610 | 644 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 610 | 652 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.035233 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 567 | 599 | 11.778342 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 432 | - | - |
| Coils | Coil | Coil | 369 | 396 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 4.15E-305 |
| RefSeq | XP_039778702.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Panicum virgatum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 3.99E-302 | |
| TrEMBL | A0A8T0XZB3 | LisH domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG539700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology