Basic Information
Locus ID:
CH07.3782
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 44587532 | 44592936 | + | CH07.3782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 105,444.23 Da | 49.44 | 81.75 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 754 | 942 | 5.9E-50 | IPR025886 |
| Pfam | PF14299 | Phloem protein 2 | 470 | 609 | 6.9E-40 | IPR025886 |
| Pfam | PF00646 | F-box domain | 375 | 415 | 3.3E-6 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 138 | 314 | 7.1E-57 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 640 | 701 | 1.96E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 372 | 445 | 4.06E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 98 | 8.37E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 373 | 415 | 2.3E-7 | - |
| SMART | SM00256 | fbox_2 | 47 | 88 | 17.0 | IPR001810 |
| SMART | SM00256 | fbox_2 | 377 | 417 | 9.1E-6 | IPR001810 |
| SMART | SM00256 | fbox_2 | 653 | 693 | 45.0 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 371 | 417 | 12.358865 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 635 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80110.1 | phloem protein 2-B11. | 7.6E-57 |
| RefSeq | XP_025826055.1 | F-box protein PP2-B1-like isoform X1 [Panicum hallii] | 3.72E-258 |
| Q949S5 | F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1 | 7.34E-56 | |
| TrEMBL | A0A2T7FDM1 | F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G432200 PE=4 SV=1 | 1.58E-257 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH07.3782 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0149390, gene-QOZ80_2AG0150010 ... |