Basic Information
Locus ID:
CH07.3713
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 44036134 | 44044461 | - | CH07.3713 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 143,738.45 Da | 52.38 | 75.21 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 401 | 667 | 1.5E-22 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 458 | 669 | 4.12E-44 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 436 | 672 | 6.4E-54 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 221 | 670 | 25.797869 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 584 | 602 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1269 | 1291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1242 | 1291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1181 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57990.1 | ubiquitin-specific protease 23. Encodes a ubiquitin-specific protease. | 4.54E-56 |
| RefSeq | XP_022682887.1 | ubiquitin carboxyl-terminal hydrolase 23 isoform X1 [Setaria italica] | 0 |
| Q9FPS4 | Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana OX=3702 GN=UBP23 PE=2 SV=2 | 4.47E-55 | |
| TrEMBL | A0A1E5W6J4 | Ubiquitin carboxyl-terminal hydrolase 23 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0006022 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology