Basic Information
Locus ID:
CH07.3685
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 43816901 | 43823190 | - | CH07.3685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 109,564.13 Da | 60.29 | 76.27 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 38 | 193 | 1.85218E-40 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 793 | 834 | 6.94031E-24 | - |
| Pfam | PF00069 | Protein kinase domain | 506 | 718 | 1.6E-16 | IPR000719 |
| Pfam | PF04564 | U-box domain | 789 | 839 | 8.0E-10 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 777 | 839 | 2.47E-16 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 67 | 158 | 1.93E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 473 | 715 | 6.83E-34 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 474 | 580 | 7.7E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 782 | 845 | 6.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 12 | 164 | 2.4E-6 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 584 | 757 | 2.5E-22 | - |
| SMART | SM00504 | Ubox_2 | 792 | 862 | 2.3E-16 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 788 | 862 | 18.020456 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 499 | 793 | 21.304897 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 625 | 637 | - | IPR008266 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 986 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 33 | - | - |
| Coils | Coil | Coil | 390 | 410 | - | - |
| Coils | Coil | Coil | 425 | 445 | - | - |
| Coils | Coil | Coil | 16 | 37 | - | - |
| Coils | Coil | Coil | 338 | 382 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 6.03E-81 |
| RefSeq | XP_025799164.1 | U-box domain-containing protein 33-like isoform X1 [Panicum hallii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 5.89E-80 | |
| TrEMBL | A0A2S3GUR7 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_1G453400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.3789, BH07.3609, CH07.316, CH07.3685 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151050, gene-QOZ80_2BG0206470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037771 |
| Poaceae | Oryza coarctata | 2 | Oco03G025760, Oco04G026230 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G324800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604597, Pt_Chr0605662 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026650, Chr13G000470 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G339600, Tel5E01G341900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG032910, gene_TRIDC5AG033150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G203900.1, TraesCS5A02G205800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190970_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39767, nbis-gene-8270 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17452 |