Basic Information
Locus ID:
CH07.3636
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 43455503 | 43457979 | + | CH07.3636 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 38,506.61 Da | 44.34 | 92.66 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 52 | 104 | 8.6E-14 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 171 | 254 | 1.7E-11 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 5.81E-52 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 147 | 1.5E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 151 | 284 | 5.2E-26 | IPR036770 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 2.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.1E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 0.0013 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 11.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0076 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 9.993605 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.19366 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.7794 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.277257 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.20864 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.36565 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 11.691612 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.89137 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 7.4E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 7.4E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 1.55E-144 |
| RefSeq | XP_004954184.1 | probable E3 ubiquitin-protein ligase XBOS32 [Setaria italica] | 4.33E-211 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 1.88E-195 | |
| TrEMBL | A0A4U6WGK9 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G354500v2 PE=4 SV=1 | 2.43E-210 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology