Basic Information
Locus ID:
CH07.3623
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 43320470 | 43326778 | + | CH07.3623 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 133,787.83 Da | 57.35 | 80.16 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 1156 | 1198 | 8.09389E-18 | - |
| Pfam | PF13639 | Ring finger domain | 1157 | 1198 | 1.0E-10 | IPR001841 |
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 3 | 375 | 1.6E-87 | IPR012871 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1150 | 1202 | 1.89E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1138 | 1206 | 3.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 1157 | 1197 | 1.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1157 | 1198 | 12.061441 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1205 | 1226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 984 | 998 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 696 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 5.49E-129 |
| RefSeq | XP_025827464.1 | E3 ubiquitin-protein ligase At1g63170-like [Panicum hallii] | 1.13E-269 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 1.04E-38 | |
| TrEMBL | A0A3L6QE12 | E3 ubiquitin-protein ligase OS=Panicum miliaceum OX=4540 GN=C2845_PM12G29240 PE=4 SV=1 | 3.02E-279 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology