Basic Information
Locus ID:
CH07.3580
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 42964870 | 42969752 | - | CH07.3580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 85,877.34 Da | 54.38 | 74.53 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 211 | 344 | 4.65243E-62 | - |
| CDD | cd17920 | DEXHc_RecQ | 25 | 210 | 1.2399E-92 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 190 | 7.8E-12 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 230 | 333 | 1.7E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 347 | 419 | 2.9E-10 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 75 | 356 | 1.74E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 7 | 210 | 3.3E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 211 | 437 | 2.6E-64 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 219 | 7.1E-19 | IPR014001 |
| SMART | SM00490 | helicmild6 | 254 | 335 | 2.0E-21 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 420 | 6.9E-129 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 219 | 374 | 18.256874 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 203 | 19.217133 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 779 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 779 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 8.18E-252 |
| RefSeq | XP_025805602.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Panicum hallii] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 7.86E-251 | |
| TrEMBL | A0A3L6QH70 | ATP-dependent DNA helicase OS=Panicum miliaceum OX=4540 GN=C2845_PM12G28860 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology