Basic Information
Locus ID:
CH07.3492
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 42130410 | 42131405 | + | CH07.3492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 36,531.70 Da | 70.78 | 51.09 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 196 | 238 | 2.55598E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 3.4E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 196 | 238 | 3.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 241 | 5.05E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 244 | 4.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 237 | 3.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 238 | 12.474524 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 1.42E-40 |
| RefSeq | XP_034575647.1 | probable E3 ubiquitin-protein ligase RHC1A [Setaria viridis] | 9.95E-184 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 6.76E-33 | |
| TrEMBL | A0A2T7FCK0 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G402300 PE=4 SV=1 | 2.03E-183 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology