Basic Information
Locus ID:
CH07.3322
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 40630643 | 40631851 | + | CH07.3322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 43,121.55 Da | 52.18 | 82.02 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 198 | 1.19283E-18 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 4.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 204 | 2.78E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 202 | 3.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 9.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.474524 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 2.27E-101 |
| RefSeq | XP_039791431.1 | RING-H2 finger protein ATL46-like [Panicum virgatum] | 7.51E-250 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 2.19E-100 | |
| TrEMBL | A0A1E5WCQ3 | RING-H2 finger protein ATL46 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0003769 PE=4 SV=1 | 1.87E-254 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology