Basic Information
Locus ID:
CH07.329
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 2607038 | 2608417 | - | CH07.329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 44,380.38 Da | 29.54 | 87.00 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 257 | 411 | 1.41007E-74 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 14 | 232 | 1.19001E-49 | - |
| Pfam | PF00190 | Cupin | 255 | 397 | 3.6E-20 | IPR006045 |
| Pfam | PF00190 | Cupin | 17 | 77 | 3.1E-9 | IPR006045 |
| Pfam | PF00190 | Cupin | 117 | 210 | 6.2E-10 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 114 | 403 | 1.56E-38 | IPR011051 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 14 | 77 | 1.04E-9 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 6 | 96 | 4.2E-9 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 254 | 416 | 2.4E-47 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 104 | 232 | 3.1E-16 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 13 | 216 | 1.1E-18 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 254 | 398 | 1.8E-12 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 353 | 371 | 3.7E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 375 | 392 | 3.7E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 270 | 290 | 3.7E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 335 | 350 | 3.7E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 317 | 333 | 3.7E-12 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 4.53E-168 |
| RefSeq | XP_034569400.1 | 11S globulin seed storage protein 2-like [Setaria viridis] | 5.28E-244 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 5.64E-22 | |
| TrEMBL | A0A1E5WBH7 | 11S seed storage protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0004254 PE=3 SV=1 | 4.6E-248 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology