Basic Information
Locus ID:
CH07.3283
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 40269489 | 40270868 | - | CH07.3283 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 48,767.05 Da | 50.55 | 97.95 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 51 | 92 | 5.48966E-22 | - |
| Pfam | PF04564 | U-box domain | 47 | 118 | 3.1E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 122 | 1.32E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 222 | 448 | 4.99E-20 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 123 | 1.0E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 126 | 451 | 4.6E-20 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 50 | 113 | 3.1E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 46 | 120 | 33.40313 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 5.13E-79 |
| RefSeq | XP_039773090.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 4.63E-246 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 4.96E-78 | |
| TrEMBL | A0A3L6RQV1 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM11G26630 PE=4 SV=1 | 4.17E-245 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology