Basic Information
Locus ID:
CH07.3271
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
RdRP
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 40145865 | 40166637 | + | CH07.3271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 160,054.69 Da | 43.44 | 79.84 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07058 | Microtubule-associated protein 70 | 31 | 564 | 7.4E-287 | IPR009768 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 1061 | 1418 | 2.9E-104 | IPR007855 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 480 | - | - |
| Coils | Coil | Coil | 310 | 337 | - | - |
| Coils | Coil | Coil | 150 | 187 | - | - |
| Coils | Coil | Coil | 514 | 559 | - | - |
| Coils | Coil | Coil | 47 | 67 | - | - |
| Coils | Coil | Coil | 261 | 288 | - | - |
| Coils | Coil | Coil | 202 | 250 | - | - |
| Coils | Coil | Coil | 75 | 123 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 4.54E-250 |
| RefSeq | XP_039772976.1 | probable RNA-dependent RNA polymerase 1 [Panicum virgatum] | 0 |
| Q6Z746 | Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica OX=39947 GN=MAP70.2 PE=2 SV=1 | 6.72E-278 | |
| TrEMBL | A0A8J5V4U1 | RNA-dependent RNA polymerase OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0002g26649 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology