Basic Information
Locus ID:
CH07.3205
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 39726685 | 39729996 | - | CH07.3205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 68,760.38 Da | 39.97 | 96.09 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 123 | 145 | 0.069 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 71 | 7.4E-14 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 307 | 573 | 3.5E-41 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 199 | 1.36E-40 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 283 | 574 | 1.75E-74 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 273 | 380 | 6.9E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 213 | 3.2E-57 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 593 | 4.5E-60 | - |
| SMART | SM00220 | serkin_6 | 304 | 559 | 1.9E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 304 | 559 | 34.887672 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 310 | 332 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 423 | 435 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16000.1 | NSP-interacting kinase 1. NSP-interacting kinase (NIK1), receptor-like kinase, involved in defense response against geminivirus It acts as a virulence target of the begomovirus nuclear shuttle protein (NSP). | 2.46E-264 |
| RefSeq | XP_022678571.1 | LRR receptor kinase SERL2 [Setaria italica] | 0 |
| Q9FP13 | LRR receptor kinase SERL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERL2 PE=1 SV=1 | 5.68E-296 | |
| TrEMBL | K3YQV1 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101783556 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology