Basic Information
Locus ID:
CH07.3188
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 39620319 | 39621848 | - | CH07.3188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 57,274.75 Da | 66.88 | 74.81 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 414 | 499 | 3.9E-31 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 274 | 300 | 0.61 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 240 | 266 | 1.1E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 149 | 164 | 1.4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 311 | 333 | 1.3 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 147 | 378 | 9.6E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 240 | 266 | 1.8E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 237 | 267 | 9.536388 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 89 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 1.11E-134 |
| RefSeq | XP_021311222.1 | pentatricopeptide repeat-containing protein At2g15690 [Sorghum bicolor] | 3.74E-276 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 1.08E-133 | |
| TrEMBL | A0A1W0VX62 | DYW_deaminase domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G128000 PE=4 SV=1 | 8.47E-275 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology