Basic Information
Locus ID:
CH07.3156
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 39372424 | 39373483 | - | CH07.3156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 37,095.80 Da | 57.32 | 68.36 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 80 | 220 | 2.28389E-44 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 80 | 218 | 9.5E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 69 | 227 | 2.9E-44 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 74 | 230 | 3.1E-43 | IPR016135 |
| SMART | SM00212 | ubc_7 | 79 | 225 | 3.1E-45 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 76 | 225 | 39.094444 | IPR000608 |
| Coils | Coil | Coil | 250 | 290 | - | - |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08690.1 | ubiquitin-conjugating enzyme 11. | 9.18E-38 |
| RefSeq | XP_025822763.1 | ubiquitin-conjugating enzyme E2 11-like [Panicum hallii] | 1.25E-65 |
| P35133 | Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana OX=3702 GN=UBC10 PE=1 SV=1 | 8.86E-37 | |
| TrEMBL | A0A835KJ31 | UBC core domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_014087 PE=4 SV=1 | 2.75E-110 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||