Basic Information
Locus ID:
CH07.3107
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 38971016 | 38976848 | + | CH07.3107 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 52,356.99 Da | 53.81 | 80.94 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 115 | 152 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 322 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 112 | 326 | 6.33E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 106 | 387 | 3.4E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 160 | 200 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 275 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 155 | 0.36 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 326 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 326 | 9.071966 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 310 | 324 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025801768.1 | uncharacterized protein LOC112881316 [Panicum hallii] | 8.43E-29 |
| TrEMBL | A0A835DYX3 | Integrase catalytic domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_062140 PE=4 SV=1 | 9.09E-22 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH07.3107.