Basic Information
Locus ID:
CH07.3047
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the TUB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 38502215 | 38509721 | + | CH07.3047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 82,675.45 Da | 53.89 | 84.32 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00293 | USP_Like | 613 | 737 | 6.03744E-28 | - |
| Pfam | PF00582 | Universal stress protein family | 611 | 738 | 9.1E-21 | IPR006016 |
| Pfam | PF00646 | F-box domain | 69 | 118 | 1.5E-8 | IPR001810 |
| Pfam | PF01167 | Tub family | 132 | 424 | 1.7E-104 | IPR000007 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 611 | 740 | 4.94E-26 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 58 | 112 | 3.27E-6 | IPR036047 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 119 | 427 | 3.4E-93 | IPR025659 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 599 | 742 | 1.3E-26 | IPR014729 |
| Gene3D | G3DSA:1.20.1280.50 | - | 63 | 116 | 4.0E-6 | - |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 129 | 423 | 1.5E-91 | IPR025659 |
| ProSitePatterns | PS01200 | Tub family signature 1. | 357 | 370 | - | IPR018066 |
| PRINTS | PR01573 | Tubby superfamily signature | 339 | 356 | 7.3E-66 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 407 | 429 | 7.3E-66 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 185 | 201 | 7.3E-66 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 249 | 276 | 7.3E-66 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 357 | 373 | 7.3E-66 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 201 | 225 | 7.3E-66 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 386 | 405 | 7.3E-66 | IPR000007 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 564 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18280.1 | tubby like protein 2. Member of TLP family | 1.73E-149 |
| RefSeq | XP_039791129.1 | tubby-like F-box protein 5 [Panicum virgatum] | 7.83E-294 |
| Q6Z2G9 | Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP5 PE=2 SV=1 | 4.22E-259 | |
| TrEMBL | A0A8T0X628 | Tubby-like F-box protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG449800 PE=3 SV=1 | 1.77E-292 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg987 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21660 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010221 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12431, Sbi_jg45908 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20247 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022457 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56063, Sgl61396, Sgl61632 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015313, gene:ENSEOMG00000037138 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007490, CQ.Regalona.r1.9AG0016980 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30114430, pistato.v30114510, pistato.v30114830 |
| Apiaceae | Apium graveolens | 4 | Ag1G00932, Ag6G02574, Ag9G00061, AgUnG01117 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010290, scaffold002246G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703730 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2736.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri8G12681, FtriNA30477 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G21620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000338m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00780.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g017400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0147 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0174 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0384s00012.v1.0, Dusal.0886s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20560 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.148, evm.TU.LG08.149 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007511, Pov_00021946, Pov_00041278 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16700, Lb3G17262 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3148, BH07.2979, CH07.3047 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0142510, gene-QOZ80_2BG0197980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0607560.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_024643 |
| Poaceae | Oryza coarctata | 2 | Oco03G019310, Oco04G020100 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g47650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G247800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203929 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004100, Chr09G022270, Chr15G005510 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG041820, gene_TRIDC6BG048830 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G015000.1.cds1, TraesCS2A02G015300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb252090_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8988 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14232 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.359, evm.TU.LG08.1803, evm.TU.LG09.1557 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g23610, gene.Posoc06g01200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.203 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5003 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9910 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9452 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1111 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004881 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14757 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1246 |
| Salicaceae | Populus euphratica | 3 | populus_peu08863, populus_peu08864, populus_peu36491 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599180 |
| Solanaceae | Solanum chilense | 1 | SOLCI007333200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014666 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11445_chr02_+ |