Basic Information
Locus ID:
CH07.2990
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 37992404 | 37994158 | - | CH07.2990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 42,799.07 Da | 42.25 | 66.19 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 67 | 1.1E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 78 | 1.76E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 73 | 2.4E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 4 | 73 | 1.2E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 77 | 11.212958 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 294 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 7.85E-81 |
| RefSeq | XP_004953570.1 | binding partner of ACD11 1 [Setaria italica] | 1.59E-183 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 2.03E-58 | |
| TrEMBL | K3Z117 | RRM domain-containing protein OS=Setaria italica OX=4555 GN=101772192 PE=4 SV=1 | 3.59E-182 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology