Basic Information
Locus ID:
CH07.2982
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RWD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 37946408 | 37950257 | + | CH07.2982 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 56,951.38 Da | 54.28 | 81.97 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05773 | RWD domain | 45 | 184 | 6.2E-21 | IPR006575 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 397 | 433 | 1.9E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 312 | 368 | 1.4E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 239 | 323 | 6.36E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 312 | 373 | 5.83E-8 | - |
| SUPERFAMILY | SSF54495 | UBC-like | 37 | 182 | 8.13E-20 | IPR016135 |
| SUPERFAMILY | SSF57850 | RING/U-box | 382 | 440 | 1.17E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 238 | 323 | 1.1E-16 | IPR013083 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 35 | 190 | 3.2E-25 | IPR016135 |
| Gene3D | G3DSA:1.20.120.1750 | - | 366 | 480 | 1.7E-15 | - |
| SMART | SM00184 | ring_2 | 400 | 489 | 1.1 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 380 | 444 | 0.017 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 311 | 368 | 1.3E-8 | IPR002867 |
| SMART | SM00184 | ring_2 | 243 | 290 | 0.1 | IPR001841 |
| SMART | SM00591 | RWD2001b | 49 | 192 | 5.1E-10 | IPR006575 |
| ProSiteProfiles | PS50908 | RWD domain profile. | 49 | 188 | 13.837025 | IPR006575 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 239 | 448 | 27.106749 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 288 | 9.405901 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 260 | 269 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 479 | - | - |
| Coils | Coil | Coil | 37 | 57 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32340.1 | NDR1/HIN1-like 8. Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine. | 6.21E-139 |
| RefSeq | XP_039771091.1 | E3 ubiquitin-protein ligase RNF14-like [Panicum virgatum] | 1.84E-301 |
| F1RB95 | E3 ubiquitin-protein ligase RNF14 OS=Danio rerio OX=7955 GN=rnf14 PE=2 SV=1 | 2.05E-56 | |
| TrEMBL | A0A8T0XUH0 | RBR-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1KG458500 PE=3 SV=1 | 4.17E-300 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37360 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15035 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004310, Ah004313, Ah004315, Ah004317, Ah004320, Ah004321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106710 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15825, Sbi_jg24534, Sbi_jg56621, Sbi_jg8383 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11664, Seu_jg13822 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010865, GOSA_00010866 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl22012, Sgl22013, Sgl22124, Sgl22125, Sgl27280, Sgl51287 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005118, gene:ENSEOMG00000022460 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0002260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30029780 |
| Apiaceae | Apium graveolens | 1 | Ag8G01086 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G003660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714585 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.108.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G09830 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G32340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007022m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g28560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g035510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0292 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0304, Cgl01G0308 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g05620 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.823 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003048, Pov_00003050, Pov_00003052 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24266 |
| Poaceae | Echinochloa crus-galli | 11 | AH07.3080, AH07.3081, AH09.2149, AH09.2150, BH07.2902 ... |
| Poaceae | Eleusine coracana subsp. coracana | 11 | gene-QOZ80_2AG0141730, gene-QOZ80_2BG0197310 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0197380.1, HORVU.MOREX.r3.2HG0197430.1 ... |
| Poaceae | Lolium multiflorum | 17 | gene-QYE76_008070, gene-QYE76_039445, gene-QYE76_039446 ... |
| Poaceae | Oryza coarctata | 7 | Oco03G018740, Oco04G019470, Oco07G014620, Oco07G014630 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os02g46720.1, LOC_Os02g46730.1, LOC_Os02g46740.1 ... |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_04G231300, gene-BS78_06G211200 ... |
| Poaceae | Puccinellia tenuiflora | 11 | Pt_Chr0301531, Pt_Chr0301532, Pt_Chr0301534, Pt_Chr0301536 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr15G006090, Chr25G004200, Chr25G004220, Chr30G004050 ... |
| Poaceae | Thinopyrum elongatum | 15 | Tel1E01G107900, Tel1E01G229000, Tel2E01G755200 ... |
| Poaceae | Triticum dicoccoides | 14 | gene_TRIDC2AG063830, gene_TRIDC2AG063840 ... |
| Poaceae | Triticum aestivum | 30 | TraesCS1B02G065800.1, TraesCS1B02G476700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb072220_P001, Zm00001eb251320_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20351 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.694, evm.TU.LG17.706 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g00730, gene.Posoc07g00770 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.547 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17806 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11632 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8199 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.56 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018445 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16251 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10564 |
| Salicaceae | Populus euphratica | 1 | populus_peu03210 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609713 |
| Solanaceae | Solanum chilense | 1 | SOLCI002820400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028660 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15512 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0488 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02750.v3.1 |