halophFGD

Basic Information

Locus ID: CH07.2968

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: RING-H2 zinc finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH07	37825620	37826789	-	CH07.2968

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.68	41,189.66 Da	66.52	64.24	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	162	205	4.63221E-17	-
Pfam	PF13639	Ring finger domain	162	205	4.0E-13	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	149	211	2.17E-21	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	138	211	8.5E-21	IPR013083
SMART	SM00184	ring_2	163	204	2.0E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	163	205	12.607302	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	330	389	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	222	305	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	223	251	-	-

KEGG Pathway

KO Term:

K19041 (E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G17600.1	RING/U-box superfamily protein.	2.81E-60
RefSeq	XP_039790994.1	E3 ubiquitin-protein ligase Os04g0590900-like [Panicum virgatum]	3.81E-229
Swiss-Prot	Q7XLY8	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2	3.21E-142
TrEMBL	A0A8T0XCM8	RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1NG434500 PE=4 SV=1	8.61E-228

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg1248, jg1697, jg20065, jg26738, jg28506, jg29110, jg31093
Aizoaceae	Mesembryanthemum crystallinum	3	gene_15030, gene_16893, gene_23348
Amaranthaceae	Atriplex hortensis	3	Ah004292, Ah023388, Ah023791
Amaranthaceae	Beta vulgaris	3	BVRB_1g008340, BVRB_6g138790, BVRB_9g212250
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg24516, Sbi_jg29077, Sbi_jg3298, Sbi_jg4113, Sbi_jg5765 ... Sbi_jg49687, Sbi_jg7044, Sbi_jg8367
Amaranthaceae	Salicornia europaea	4	Seu_jg11679, Seu_jg13482, Seu_jg5567, Seu_jg6638
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00000112, GOSA_00001078, GOSA_00001700, GOSA_00013522
Amaranthaceae	Suaeda glauca	11	Sgl10513, Sgl11473, Sgl15763, Sgl16873, Sgl23132, Sgl28242 ... Sgl34224, Sgl39522, Sgl39566, Sgl51303, Sgl56703
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000082, gene:ENSEOMG00000005550 ... gene:ENSEOMG00000016054, gene:ENSEOMG00000024415, gene:ENSEOMG00000025871, gene:ENSEOMG00000026923, gene:ENSEOMG00000035044, gene:ENSEOMG00000047026, gene:ENSEOMG00000047613
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0008230, CQ.Regalona.r1.1BG0014650 ... CQ.Regalona.r1.2BG0021180, CQ.Regalona.r1.5BG0002410, CQ.Regalona.r1.6AG0018880, CQ.Regalona.r1.6BG0019910
Apiaceae	Apium graveolens	8	Ag10G00361, Ag3G00052, Ag6G01108, Ag7G00512, Ag7G01500 ... Ag9G00299, AgUnG01473, AgUnG01476
Arecaceae	Cocos nucifera	2	COCNU_07G003810, COCNU_10G002640
Arecaceae	Phoenix dactylifera	3	gene-LOC103704697, gene-LOC103711781, gene-LOC103717976
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1697.V1.1
Asteraceae	Flaveria trinervia	6	Ftri13G07255, Ftri14G30251, Ftri15G24903, Ftri4G24808 ... Ftri5G06441, Ftri9G08598
Brassicaceae	Arabidopsis thaliana	6	AT1G72220.1, AT3G03550.1, AT4G17905.1, AT4G33565.1 ... AT5G10380.1, AT5G17600.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10015712m.g.v1.0, Thhalv10015812m.g.v1.0 ... Thhalv10018579m.g.v1.0, Thhalv10022279m.g.v1.0, Thhalv10025767m.g.v1.0, Thhalv10025810m.g.v1.0, Thhalv10028253m.g.v1.0, Thhalv10029309m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp3g02530.v2.2, Sp5g27310.v2.2, Sp6g26620.v2.2 ... Sp6g33070.v2.2, Sp7g16200.v2.2, Sp7g31300.v2.2
Brassicaceae	Brassica nigra	7	BniB02g051560.2N, BniB03g050380.2N, BniB05g018450.2N ... BniB05g069580.2N, BniB07g034090.2N, BniB07g060620.2N, BniB08g008720.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0369, Ceq03G2203
Casuarinaceae	Casuarina glauca	3	Cgl01G0367, Cgl03G2346, Cgl05G1094
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g09510, gene.Cymno15g00120, gene.Cymno18g05760
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g07150, gene.Thate09g05020
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10144, nbisL1-mrna-11376, nbisL1-mrna-2083 ... nbisL1-mrna-5710
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.2484, evm.TU.LG03.1877, evm.TU.LG05.787 ... evm.TU.LG06.1543, evm.TU.LG12.170
Plantaginaceae	Plantago ovata	4	Pov_00003001, Pov_00016928, Pov_00031243, Pov_00039762
Poaceae	Echinochloa crus-galli	11	AH07.3061, AH09.1176, AH09.2120, BH06.2108, BH07.2886 ... BH09.1278, BH09.2291, CH07.2183, CH07.2968, CH09.1390, CH09.2429
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0134810, gene-QOZ80_2AG0141570 ... gene-QOZ80_2BG0190420, gene-QOZ80_2BG0197160, gene-QOZ80_4AG0305820, gene-QOZ80_4BG0336780, gene-QOZ80_4BG0346700
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0172180.1.CDS1 ... HORVU.MOREX.r3.2HG0197160.1.CDS1, HORVU.MOREX.r3.4HG0334670.1.CDS1, HORVU.MOREX.r3.5HG0496950.1.CDS1, HORVU.MOREX.r3.6HG0605460.1.CDS1, HORVU.MOREX.r3.7HG0736710.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_023125, gene-QYE76_024478, gene-QYE76_044347 ... gene-QYE76_045930, gene-QYE76_045940
Poaceae	Oryza coarctata	7	Oco03G018660, Oco04G013120, Oco04G019390, Oco07G007190 ... Oco07G014520, Oco08G007100, Oco08G013980
Poaceae	Oryza sativa	4	LOC_Os02g36330.1, LOC_Os02g46600.1, LOC_Os04g37740.1 ... LOC_Os04g50100.1
Poaceae	Paspalum vaginatum	4	gene-BS78_04G171200, gene-BS78_04G232500 ... gene-BS78_06G115200, gene-BS78_06G209600
Poaceae	Sporobolus alterniflorus	13	Chr06G004700, Chr06G009340, Chr09G013680, Chr09G023040 ... Chr15G006180, Chr15G010860, Chr23G003200, Chr25G004320, Chr25G007860, Chr26G007600, Chr26G014380, Chr30G004190, Chr30G007750
Poaceae	Thinopyrum elongatum	3	Tel2E01G559400, Tel2E01G760600, Tel6E01G488500
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG046250, gene_TRIDC2AG064040 ... gene_TRIDC2BG049190, gene_TRIDC2BG068270, gene_TRIDC6AG040570, gene_TRIDC6BG047490, gene_TRIDC7AG065510
Poaceae	Triticum aestivum	11	TraesCS2A02G318300.1, TraesCS2A02G448700.1.cds1 ... TraesCS2B02G336400.1.cds1, TraesCS2B02G469500.1.cds1, TraesCS2D02G315900.1.cds1, TraesCS2D02G447900.1.cds1, TraesCS6A02G264300.1.cds1, TraesCS6B02G291300.1.cds1, TraesCS6D02G250600.1.cds1, TraesCS7B02G371200.1.cds1, TraesCS7D02G457000.1.cds1
Poaceae	Zea mays	4	Zm00001eb072390_P001, Zm00001eb081320_P001 ... Zm00001eb182770_P001, Zm00001eb251210_P001
Poaceae	Zoysia japonica	6	nbis-gene-18748, nbis-gene-22200, nbis-gene-37713 ... nbis-gene-5708, nbis-gene-7533, nbis-gene-9074
Poaceae	Zoysia macrostachya	6	Zma_g14173, Zma_g16523, Zma_g16918, Zma_g19799, Zma_g21371 ... Zma_g21885
Portulacaceae	Portulaca oleracea	14	evm.TU.LG04.1734, evm.TU.LG04.1842, evm.TU.LG04.3031 ... evm.TU.LG05.263, evm.TU.LG07.1947, evm.TU.LG10.1225, evm.TU.LG10.708, evm.TU.LG14.698, evm.TU.LG16.578, evm.TU.LG17.717, evm.TU.LG19.502, evm.TU.LG22.1542, evm.TU.LG24.586, evm.TU.LG25.1051
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g22610, gene.Posoc02g29820, gene.Posoc07g00480
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_14_RagTag.538, evm.TU.Scaffold_16_RagTag.489 ... evm.TU.Scaffold_1_RagTag.1019, evm.TU.Scaffold_1_RagTag.506, evm.TU.Scaffold_3_RagTag.1093, evm.TU.Scaffold_6_RagTag.1681, evm.TU.Scaffold_7_RagTag.959, evm.TU.Scaffold_8_RagTag.782
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-17478, nbisL1-mrna-17816, nbisL1-mrna-18966 ... nbisL1-mrna-3056, nbisL1-mrna-3115, nbisL1-mrna-6597, nbisL1-mrna-7658, nbisL1-mrna-893, nbisL1-mrna-9454
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-12964, nbisL1-mrna-15081, nbisL1-mrna-16003 ... nbisL1-mrna-17729, nbisL1-mrna-18041, nbisL1-mrna-20632, nbisL1-mrna-246
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-12085, nbisL1-mrna-20509, nbisL1-mrna-21189 ... nbisL1-mrna-2350, nbisL1-mrna-5533, nbisL1-mrna-6790, nbisL1-mrna-8212
Rhizophoraceae	Kandelia candel	8	add.evm.TU.utg000007l.40, add.evm.TU.utg000011l.408 ... add.evm.TU.utg000012l.118, add.evm.TU.utg000016l.375, add.evm.TU.utg000018l.193, add.evm.TU.utg000019l.258, add.evm.TU.utg000022l.122, evm.TU.utg000002l.729
Rhizophoraceae	Kandelia obovata	7	Maker00001847, Maker00003165, Maker00010855, Maker00011154 ... Maker00014297, Maker00016600, Maker00018645
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-17907, nbisL1-mrna-19210, nbisL1-mrna-20037 ... nbisL1-mrna-20119, nbisL1-mrna-21152, nbisL1-mrna-22873, nbisL1-mrna-23323
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10575, nbisL1-mrna-1783, nbisL1-mrna-20284 ... nbisL1-mrna-21745, nbisL1-mrna-4392, nbisL1-mrna-645, nbisL1-mrna-9983
Salicaceae	Populus euphratica	10	populus_peu03190, populus_peu03193, populus_peu13726 ... populus_peu19245, populus_peu22761, populus_peu22889, populus_peu24185, populus_peu32218, populus_peu34044, populus_peu38137
Solanaceae	Lycium barbarum	9	gene-LOC132598821, gene-LOC132603993, gene-LOC132612638 ... gene-LOC132614968, gene-LOC132627578, gene-LOC132635299, gene-LOC132640449, gene-LOC132644639, gene-LOC132645146
Solanaceae	Solanum chilense	10	SOLCI000030800, SOLCI000741400, SOLCI000741500 ... SOLCI000741600, SOLCI003057200, SOLCI004059200, SOLCI005586300, SOLCI005633500, SOLCI005633900, SOLCI005769100
Solanaceae	Solanum pennellii	12	gene-LOC107003170, gene-LOC107006054, gene-LOC107015168 ... gene-LOC107016211, gene-LOC107018251, gene-LOC107021752, gene-LOC107021759, gene-LOC107021763, gene-LOC107025937, gene-LOC107028408, gene-LOC107028720, gene-LOC107032435
Tamaricaceae	Reaumuria soongarica	6	STRG.15547_chr06_+, STRG.16455_chr06_-, STRG.20035_chr07_- ... STRG.8543_chr06_-, STRG.8951_chr03_-, gene_15514
Tamaricaceae	Tamarix chinensis	8	TC03G2960, TC08G2439, TC09G0175, TC09G0484, TC09G0485 ... TC09G0997, TC09G1094, TC11G0699
Zosteraceae	Zostera marina	4	Zosma01g09020.v3.1, Zosma02g02820.v3.1, Zosma02g19260.v3.1 ... Zosma06g01360.v3.1