Basic Information
Locus ID:
CH07.2911
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
BRH1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 37239932 | 37240588 | - | CH07.2911 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 23,500.75 Da | 55.28 | 92.34 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 115 | 159 | 6.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 165 | 2.15E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 164 | 6.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 116 | 158 | 8.0E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 115 | 159 | 0.0032 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 116 | 159 | 12.312242 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 3.31E-31 |
| RefSeq | XP_004953456.1 | E3 ubiquitin-protein ligase RHA2B [Setaria italica] | 9.29E-117 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 3.2E-30 | |
| TrEMBL | A0A835FPJ2 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_007164 PE=4 SV=1 | 1.09E-117 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology