Basic Information
Locus ID:
CH07.2896
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 37146657 | 37151106 | + | CH07.2896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 45,980.77 Da | 29.85 | 72.20 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 294 | 0.027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 333 | 0.0093 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 106 | 128 | 2.4E-4 | IPR000571 |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 173 | 1.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 422 | 1.04E-47 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 107 | 137 | 2.67E-5 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 427 | 2.1E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 110 | 190 | 6.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 297 | 334 | 2.1E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.11 | IPR000571 |
| SMART | SM00320 | WD40_4 | 176 | 211 | 400.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 421 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 381 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 173 | 2.1E-6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 102 | 129 | 0.0045 | IPR000571 |
| SMART | SM00320 | WD40_4 | 213 | 250 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 294 | 0.0093 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 141 | 182 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.098542 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 141 | 173 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 303 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 102 | 130 | 14.980874 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 281 | 295 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 281 | 295 | 2.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 321 | 335 | 2.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 160 | 174 | 2.7E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 1.07E-145 |
| RefSeq | XP_025806289.1 | zinc finger CCCH domain-containing protein 17-like [Panicum hallii] | 4.23E-288 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 9.08E-243 | |
| TrEMBL | A0A8T0XTQ7 | Zinc finger CCCH domain-containing protein 17 OS=Panicum virgatum OX=38727 GN=PVAP13_1KG446900 PE=4 SV=1 | 8.58E-290 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology