Basic Information
Locus ID:
CH07.2891
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 37114652 | 37122696 | + | CH07.2891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.64 | 110,765.62 Da | 83.87 | 69.13 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 108 | 151 | 2.30788E-16 | - |
| Pfam | PF13639 | Ring finger domain | 108 | 151 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 157 | 1.11E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 157 | 3.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 109 | 150 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 151 | 12.636808 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 836 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 891 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 836 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 748 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11110.1 | RING/U-box superfamily protein. | 1.51E-16 |
| RefSeq | XP_004953435.1 | RING-H2 finger protein ATL73 [Setaria italica] | 3.42E-104 |
| Q9SRM0 | RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1 | 1.47E-15 | |
| TrEMBL | K3YVK8 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101752739 PE=4 SV=1 | 7.72E-103 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||