Basic Information
Locus ID:
CH07.2816
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 36431682 | 36437264 | + | CH07.2816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 118,375.91 Da | 52.32 | 80.51 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 48 | 204 | 1.5139E-36 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 971 | 1011 | 1.76906E-22 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 687 | 886 | 1.8E-23 | IPR001245 |
| Pfam | PF04564 | U-box domain | 968 | 1037 | 1.2E-15 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 657 | 939 | 8.15E-43 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 959 | 1037 | 6.71E-25 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 658 | 752 | 9.3E-23 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 44 | 177 | 7.0E-5 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 967 | 1039 | 5.9E-28 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 754 | 958 | 1.9E-27 | - |
| SMART | SM00504 | Ubox_2 | 970 | 1032 | 4.2E-26 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 681 | 951 | 19.962168 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 966 | 1039 | 32.943153 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| Coils | Coil | Coil | 397 | 417 | - | - |
| Coils | Coil | Coil | 612 | 653 | - | - |
| Coils | Coil | Coil | 482 | 530 | - | - |
| Coils | Coil | Coil | 369 | 389 | - | - |
| Coils | Coil | Coil | 548 | 568 | - | - |
| Coils | Coil | Coil | 573 | 603 | - | - |
| Coils | Coil | Coil | 345 | 365 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 2.21E-116 |
| RefSeq | XP_014660103.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 1.4E-127 | |
| TrEMBL | A0A4V6DD86 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_1G269300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |