Basic Information
Locus ID:
CH07.268
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 2158423 | 2166277 | + | CH07.268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 137,265.70 Da | 50.38 | 76.61 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 52 | 206 | 1.78371E-27 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 1.8E-107 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 359 | 418 | 2.4E-15 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 138 | 1.5E-8 | IPR002934 |
| Pfam | PF00730 | HhH-GPD superfamily base excision DNA repair protein | 1055 | 1172 | 3.6E-6 | IPR003265 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 6.28E-63 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 357 | 483 | 7.26E-35 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 12 | 205 | 2.29E-49 | IPR043519 |
| SUPERFAMILY | SSF48150 | DNA-glycosylase | 920 | 1188 | 1.57E-16 | IPR011257 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 2.2E-152 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 2.2E-152 | - |
| Gene3D | G3DSA:1.10.340.30 | Hypothetical protein; domain 2 | 920 | 1151 | 1.2E-18 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 473 | 5.7E-29 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 1023 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 999 | 1023 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 768 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 3.61E-242 |
| RefSeq | XP_025800996.1 | nuclear poly(A) polymerase 1-like isoform X1 [Panicum hallii] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 3.46E-241 | |
| TrEMBL | A0A2S3H4J9 | polynucleotide adenylyltransferase OS=Panicum hallii OX=206008 GN=PAHAL_2G473200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology