Basic Information
Locus ID:
CH07.2678
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 35148770 | 35150329 | + | CH07.2678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.21 | 17,881.49 Da | 63.61 | 79.08 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 50 | 91 | 1.2391E-16 | - |
| Pfam | PF13639 | Ring finger domain | 49 | 91 | 1.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 97 | 5.55E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 101 | 2.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 50 | 91 | 1.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 50 | 91 | 10.232069 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 163 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004952627.1 | putative RING-H2 finger protein ATL69 [Setaria italica] | 1.19E-34 |
| TrEMBL | A0A1E5UV65 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022276 PE=4 SV=1 | 4.35E-34 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH07.2678.