Basic Information
Locus ID:
CH07.2677
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 35124573 | 35132325 | + | CH07.2677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 134,582.22 Da | 40.56 | 92.85 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00180 | PKc | 23 | 262 | 7.7922E-27 | - |
| Pfam | PF00521 | DNA gyrase/topoisomerase IV, subunit A | 805 | 1139 | 1.1E-64 | IPR002205 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 329 | 375 | 4.4E-6 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 438 | 528 | 2.5E-13 | IPR020683 |
| Pfam | PF00069 | Protein kinase domain | 29 | 259 | 6.8E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 271 | 6.69E-40 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 293 | 541 | 1.15E-42 | IPR036770 |
| SUPERFAMILY | SSF56719 | Type II DNA topoisomerase | 641 | 1182 | 2.09E-89 | IPR013760 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 8 | 285 | 4.9E-34 | - |
| Gene3D | G3DSA:3.90.199.10 | Topoisomerase II, domain 5 | 807 | 1090 | 8.9E-73 | IPR013758 |
| Gene3D | G3DSA:3.30.1360.40 | - | 987 | 1078 | 8.9E-73 | - |
| Gene3D | G3DSA:3.40.50.670 | - | 629 | 748 | 2.4E-21 | IPR013759 |
| Gene3D | G3DSA:1.25.40.20 | - | 286 | 600 | 1.2E-49 | IPR036770 |
| SMART | SM00248 | ANK_2a | 326 | 355 | 0.0024 | IPR002110 |
| SMART | SM00248 | ANK_2a | 431 | 461 | 4200.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 498 | 527 | 8.2E-4 | IPR002110 |
| SMART | SM00433 | topII5 | 362 | 808 | 9.4E-4 | IPR001241 |
| SMART | SM00434 | topIV4 | 785 | 1190 | 1.1E-16 | IPR002205 |
| SMART | SM00248 | ANK_2a | 531 | 560 | 2800.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 393 | 423 | 640.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 359 | 389 | 210.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 465 | 494 | 1.7 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 326 | 357 | 10.338512 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 465 | 497 | 8.57608 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 326 | 358 | 11.3005 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 498 | 530 | 12.74284 | IPR002110 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 17 | 266 | 24.075161 | IPR000719 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 498 | 530 | 11.373236 | - |
| Coils | Coil | Coil | 1162 | 1189 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23890.2 | topoisomerase II. Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. | 3.64E-69 |
| RefSeq | XP_038982287.1 | DNA topoisomerase 2 [Phoenix dactylifera] | 9.53E-80 |
| P30182 | DNA topoisomerase 2 OS=Arabidopsis thaliana OX=3702 GN=TOP2 PE=2 SV=2 | 3.84E-68 | |
| TrEMBL | A0A8K0IE06 | DNA topoisomerase 2 OS=Cocos nucifera OX=13894 GN=COCNU_07G003070 PE=3 SV=1 | 1.82E-83 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH07.2677.