Basic Information
Locus ID:
CH07.2632
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 34506613 | 34515091 | + | CH07.2632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 101,210.56 Da | 57.00 | 78.19 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 256 | 365 | 4.5E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 702 | 758 | 4.6E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 698 | 759 | 1.82E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 133 | 391 | 7.62E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 829 | 865 | 1.09E-5 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 133 | 394 | 8.0E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 699 | 774 | 7.5E-8 | - |
| SMART | SM00577 | forpap2 | 224 | 374 | 5.2E-11 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 695 | 759 | 6.5E-5 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 390 | 16.335457 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 723 | 760 | 11.164263 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 684 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 2.33E-290 |
| RefSeq | XP_012704108.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X2 [Setaria italica] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 2.24E-289 | |
| TrEMBL | A0A4U6WEV8 | protein-serine/threonine phosphatase OS=Setaria viridis OX=4556 GN=SEVIR_1G252800v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology