Basic Information
Locus ID:
CH07.2631
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 34496376 | 34501336 | + | CH07.2631 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 107,352.79 Da | 62.86 | 63.56 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 532 | 3.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 610 | 645 | 6.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 652 | 688 | 5.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 495 | 826 | 2.83E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 481 | 579 | 7.5E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 586 | 872 | 3.1E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 649 | 688 | 1.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 734 | 781 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 782 | 823 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 608 | 646 | 6.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 533 | 4.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 691 | 729 | 1.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 534 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 501 | 534 | 12.130133 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 655 | 689 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 615 | 655 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 655 | 689 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 615 | 649 | 10.811958 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 520 | 534 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 633 | 647 | 4.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 520 | 534 | 4.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 675 | 689 | 4.5E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 171 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 3.18E-182 |
| RefSeq | XP_025814037.1 | WD repeat-containing protein 44-like [Panicum hallii] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 4.27E-45 | |
| TrEMBL | A0A2T7F9J5 | WD_REPEATS_REGION domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G315300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology