halophFGD

Basic Information

Locus ID: CH07.2503

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH07	33432448	33435424	-	CH07.2503

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.13	51,656.34 Da	55.30	71.14	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	65	432	1.25E-28	IPR036322
Gene3D	G3DSA:2.130.10.10	-	57	435	2.0E-22	IPR015943
SMART	SM00320	WD40_4	233	272	0.47	IPR001680
SMART	SM00320	WD40_4	283	323	97.0	IPR001680
SMART	SM00320	WD40_4	53	92	15.0	IPR001680
SMART	SM00320	WD40_4	343	381	310.0	IPR001680
SMART	SM00320	WD40_4	135	175	15.0	IPR001680
PIRSF	PIRSF037309	PPA2_B55	29	437	4.7E-130	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	412	438	2.6E-71	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	300	328	2.6E-71	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	244	271	2.6E-71	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	71	91	2.6E-71	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	272	299	2.6E-71	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	386	411	2.6E-71	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	358	385	2.6E-71	IPR000009
MobiDBLite	mobidb-lite	consensus disorder prediction	1	56	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	39	-	-

Gene Ontology

Molecular Function:

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G51690.2	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. 55 kDa B regulatory subunit of phosphatase 2A mRNA,	5.29E-123
RefSeq	XP_025799077.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Panicum hallii]	1.28E-257
Swiss-Prot	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1	4.1E-121
TrEMBL	A0A2S3GRC4	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Panicum hallii OX=206008 GN=PAHAL_1G308600 PE=3 SV=1	2.89E-256

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	1	CH07.2503
Poaceae	Oryza coarctata	1	Oco03G015390
Poaceae	Oryza sativa	1	LOC_Os02g40454.1