Basic Information
Locus ID:
CH07.2467
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 32981276 | 32987755 | - | CH07.2467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 87,748.94 Da | 45.94 | 60.96 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 573 | 617 | 0.00491509 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 570 | 611 | 3.84E-8 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 11 | 245 | 1.46E-10 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 571 | 617 | 4.3E-11 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 288 | 2.5E-6 | IPR011989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 690 | - | - |
| Coils | Coil | Coil | 780 | 800 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 6.57E-65 | |
| RefSeq | XP_025804875.1 | ABC transporter F family member 4-like isoform X1 [Panicum hallii] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 2.34E-61 | |
| TrEMBL | A0A3L6QHV2 | Tudor domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM12G20300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology