Basic Information
Locus ID:
CH07.2442
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 32797055 | 32808037 | - | CH07.2442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 173,861.25 Da | 45.28 | 81.42 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12292 | RRM2_La_like | 340 | 401 | 4.79737E-17 | - |
| CDD | cd14066 | STKc_IRAK | 1246 | 1507 | 2.60997E-81 | - |
| CDD | cd00054 | EGF_CA | 1113 | 1142 | 4.89087E-6 | - |
| CDD | cd08030 | LA_like_plant | 14 | 103 | 1.37644E-39 | - |
| CDD | cd12291 | RRM1_La | 121 | 192 | 3.42518E-15 | - |
| Pfam | PF05383 | La domain | 17 | 86 | 3.3E-18 | IPR006630 |
| Pfam | PF00069 | Protein kinase domain | 1242 | 1507 | 1.7E-44 | IPR000719 |
| Pfam | PF08777 | RNA binding motif | 335 | 431 | 1.2E-24 | IPR014886 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 963 | 1020 | 3.8E-10 | IPR025287 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 127 | 181 | 2.7E-8 | IPR000504 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 1072 | 1153 | 5.76E-6 | IPR009030 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 118 | 381 | 1.99E-15 | IPR035979 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1225 | 1519 | 9.16E-75 | IPR011009 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 13 | 105 | 6.44E-17 | IPR036390 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 1116 | 1155 | 3.3E-7 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 330 | 431 | 7.8E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1205 | 1315 | 3.6E-31 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 1062 | 1115 | 6.7E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1316 | 1526 | 1.3E-53 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 113 | 212 | 5.4E-16 | IPR012677 |
| Gene3D | G3DSA:1.10.10.10 | - | 5 | 107 | 2.3E-22 | IPR036388 |
| SMART | SM00360 | rrm1_1 | 334 | 401 | 0.065 | IPR000504 |
| SMART | SM00181 | egf_5 | 1116 | 1153 | 16.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 1061 | 1112 | 14.0 | IPR000742 |
| SMART | SM00360 | rrm1_1 | 121 | 193 | 7.0E-8 | IPR000504 |
| SMART | SM00715 | la | 11 | 104 | 2.1E-27 | IPR006630 |
| SMART | SM00179 | egfca_6 | 1113 | 1153 | 3.7E-4 | IPR001881 |
| SMART | SM00181 | egf_5 | 905 | 952 | 110.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 1240 | 1514 | 1.4E-33 | IPR000719 |
| ProSiteProfiles | PS51939 | xRRM domain profile. | 315 | 448 | 20.882317 | IPR014886 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 120 | 197 | 12.13395 | IPR000504 |
| ProSiteProfiles | PS50961 | La-type HTH domain profile. | 7 | 113 | 20.851978 | IPR006630 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1240 | 1514 | 37.036041 | IPR000719 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 1113 | 1136 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1362 | 1374 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1246 | 1268 | - | IPR017441 |
| PRINTS | PR00302 | Lupus La protein signature | 20 | 37 | 3.1E-8 | IPR002344 |
| PRINTS | PR00302 | Lupus La protein signature | 161 | 179 | 3.1E-8 | IPR002344 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 273 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 3.56E-122 |
| RefSeq | XP_039849086.1 | wall-associated receptor kinase 3-like isoform X1 [Panicum virgatum] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 3.45E-121 | |
| TrEMBL | A0A1E5V3G5 | La protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0019345 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23857 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034908 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g031890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20994, Sbi_jg22787 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16662 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018229 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62463, Sgl67008 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019585, gene:ENSEOMG00000022090 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0016300, CQ.Regalona.r1.2BG0018080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253450 |
| Apiaceae | Apium graveolens | 2 | Ag6G01310, Ag7G01960 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G003630 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698659, gene-LOC103707839 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.425.V1.1, AsparagusV1_04.1498.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G31063 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G79880.1, AT4G32720.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018639m.g.v1.0, Thhalv10025209m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g35890.v2.2, Sp7g30490.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g085960.2N, BniB03g009750.2N, BniB05g005320.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2112 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2308 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g11730, gene.Cymno09g00900 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0100s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g11320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-262 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.779 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013650 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08475 |
| Poaceae | Echinochloa crus-galli | 7 | AH07.2558, AH09.1443, BH07.2368, BH07.2369, BH09.1623 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0137070, gene-QOZ80_2BG0192680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178560.1 |
| Poaceae | Oryza coarctata | 4 | Oco03G015010, Oco04G015500, Oco07G009730, Oco08G009490 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g39700.1, LOC_Os04g42010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G192300, gene-BS78_06G148400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302240, Pt_Chr0302277 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G016530, Chr13G007860, Chr23G009650, Chr25G010050 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G617200, Tel2E01G617400, Tel6E01G111700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051030, gene_TRIDC2BG054450 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G352500.1, TraesCS2B02G371800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb246770_P001, Zm00001eb420980_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18573, nbis-gene-36988 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16643, Zma_g19986 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2347, evm.TU.LG07.1111 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g25090, gene.Posoc04g13800, gene.Posoc08g05040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.781 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14292, nbisL1-mrna-14293, nbisL1-mrna-28581 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21416 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1595 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.506 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000114 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14398 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19272 |
| Salicaceae | Populus euphratica | 2 | populus_peu04874, populus_peu12777 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635655, gene-LOC132635656 |
| Solanaceae | Solanum chilense | 1 | SOLCI000456600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028966 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32833_chr09_-, STRG.4132_chr03_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1713, TC02G0338 |
| Zosteraceae | Zostera marina | 3 | Zosma01g10510.v3.1, Zosma03g31040.v3.1, Zosma06g13720.v3.1 |