Basic Information
Locus ID:
CH07.2432
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Uncharacterized protein K02A2.6-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 32664759 | 32675971 | - | CH07.2432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 278,722.53 Da | 40.47 | 75.12 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09279 | RNase_HI_like | 1879 | 2003 | 5.34487E-49 | - |
| CDD | cd00303 | retropepsin_like | 1239 | 1332 | 4.84776E-14 | - |
| CDD | cd01647 | RT_LTR | 1511 | 1651 | 2.64709E-49 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1757 | 1862 | 6.99754E-28 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 652 | 742 | 1.5E-9 | IPR005162 |
| Pfam | PF17921 | Integrase zinc binding domain | 2075 | 2131 | 1.2E-8 | IPR041588 |
| Pfam | PF13456 | Reverse transcriptase-like | 1883 | 2002 | 4.2E-20 | IPR002156 |
| Pfam | PF00665 | Integrase core domain | 2150 | 2246 | 1.1E-13 | IPR001584 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1716 | 1813 | 1.3E-26 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1469 | 1849 | 6.67E-101 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2146 | 2305 | 1.64E-40 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1877 | 2000 | 1.64E-25 | IPR012337 |
| SUPERFAMILY | SSF50630 | Acid proteases | 1235 | 1334 | 5.34E-9 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 1616 | 1657 | 3.2E-6 | IPR043128 |
| Gene3D | G3DSA:3.30.420.10 | - | 1880 | 2015 | 2.4E-32 | IPR036397 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1217 | 1359 | 1.8E-14 | IPR021109 |
| Gene3D | G3DSA:1.10.340.70 | - | 2040 | 2131 | 5.3E-14 | - |
| Gene3D | G3DSA:3.10.20.370 | - | 1746 | 1815 | 2.0E-10 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1470 | 1614 | 4.4E-35 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1552 | 1615 | 4.4E-35 | IPR043128 |
| Gene3D | G3DSA:3.30.420.10 | - | 2141 | 2333 | 4.2E-52 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 1662 | 1745 | 4.0E-21 | IPR043128 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 2146 | 2306 | 23.973724 | IPR001584 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1875 | 2004 | 16.006668 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1080 | 1104 | - | - |
| Coils | Coil | Coil | 996 | 1036 | - | - |
| Coils | Coil | Coil | 1951 | 1971 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050222931.1 | uncharacterized protein LOC126673022 [Mercurialis annua] | 0 |
| P10394 | Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1 | 2.08E-42 | |
| TrEMBL | A0A5B6U2I9 | Reverse transcriptase (RNA-dependent DNA polymerase) domain containing protein OS=Gossypium australe OX=47621 GN=EPI10_034343 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||