Basic Information
Locus ID:
CH07.2285
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 31290946 | 31294985 | + | CH07.2285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 80,918.43 Da | 33.38 | 86.66 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 42 | 339 | 2.82568E-179 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 356 | 657 | 1.80073E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 361 | 653 | 6.6E-45 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 338 | 3.4E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 355 | 657 | 1.2E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 41 | 339 | 5.7E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 354 | 658 | 2.5E-52 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 356 | 658 | 40.054081 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 42 | 340 | 28.994505 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 1.29E-255 |
| RefSeq | XP_025808695.1 | glycerophosphodiester phosphodiesterase GDPDL4-like [Panicum hallii] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 1.24E-254 | |
| TrEMBL | A0A2T7F8B9 | glycerophosphodiester phosphodiesterase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G280900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology