Basic Information
Locus ID:
CH07.2243
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
voltage-gated potassium channel activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 30968504 | 30972988 | - | CH07.2243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.44 | 88,845.75 Da | 48.31 | 88.34 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00038 | CAP_ED | 591 | 706 | 3.53868E-8 | IPR000595 |
| Pfam | PF00027 | Cyclic nucleotide-binding domain | 612 | 697 | 4.9E-14 | IPR000595 |
| Pfam | PF07885 | Ion channel | 458 | 513 | 2.9E-12 | IPR013099 |
| Pfam | PF11834 | KHA, dimerisation domain of potassium ion channel | 775 | 837 | 1.1E-22 | IPR021789 |
| Pfam | PF00520 | Ion transport protein | 294 | 453 | 4.5E-7 | IPR005821 |
| SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 292 | 513 | 6.15E-34 | - |
| SUPERFAMILY | SSF51206 | cAMP-binding domain-like | 524 | 714 | 3.67E-20 | IPR018490 |
| Gene3D | G3DSA:1.10.287.70 | - | 296 | 514 | 9.1E-29 | - |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 588 | 718 | 1.6E-16 | IPR014710 |
| SMART | SM00100 | cnmp_10 | 591 | 711 | 5.1E-17 | IPR000595 |
| ProSiteProfiles | PS50042 | cAMP/cGMP binding motif profile. | 591 | 713 | 16.558401 | IPR000595 |
| ProSiteProfiles | PS51490 | KHA domain profile. | 776 | 838 | 25.675589 | IPR021789 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 185 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32650.3 | potassium channel in Arabidopsis thaliana 3. Encodes KAT3, a member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inwardly rectifying conductance): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). | 8.59E-111 |
| RefSeq | XP_004955030.1 | potassium channel KAT4 [Setaria italica] | 6.45E-268 |
| Q652U9 | Potassium channel KAT4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0254200 PE=3 SV=2 | 7.18E-149 | |
| TrEMBL | K3YYX6 | Potassium channel OS=Setaria italica OX=4555 GN=101765194 PE=3 SV=1 | 1.46E-266 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||