Basic Information
Locus ID:
CH07.2207
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 30644998 | 30649421 | - | CH07.2207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 68,456.35 Da | 42.77 | 94.51 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 166 | 181 | 1.5 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 302 | 571 | 6.0E-44 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 1.8E-10 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 200 | 2.93E-38 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 280 | 576 | 2.46E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 378 | 595 | 3.2E-70 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 270 | 377 | 2.1E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 211 | 2.7E-64 | IPR032675 |
| SMART | SM00220 | serkin_6 | 301 | 575 | 1.8E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 301 | 588 | 36.612019 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 307 | 329 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 424 | 436 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 2.079999999999E-312 |
| RefSeq | XP_025805137.1 | LRR receptor kinase SERK2 [Panicum hallii] | 0 |
| Q7XV05 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3GQ83 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G279100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology