Basic Information
Locus ID:
CH07.2182
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 30438329 | 30439414 | - | CH07.2182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 38,409.71 Da | 67.33 | 81.72 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 126 | 169 | 7.0726E-19 | - |
| Pfam | PF13639 | Ring finger domain | 126 | 169 | 4.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 177 | 5.1E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 174 | 2.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 168 | 9.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 169 | 11.854899 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 91 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35330.1 | RING/U-box superfamily protein. | 1.39E-20 |
| RefSeq | XP_025797618.1 | E3 ubiquitin-protein ligase ATL6-like [Panicum hallii] | 5.89E-183 |
| Q9C7I1 | RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1 | 1.34E-19 | |
| TrEMBL | A0A835BC29 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_038927 PE=4 SV=1 | 5.15E-186 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2290, BH06.2109, CH07.2182 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0134800, gene-QOZ80_2BG0190410 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0314400.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022959, gene-QYE76_023123 |
| Poaceae | Oryza coarctata | 1 | Oco04G013130 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g36320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G171100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G009350, Chr09G013690, Chr13G009540, Chr15G010870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G726900, Tel5E01G688100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG064960, gene_TRIDC3BG073300 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G459700.1, TraesCS3B02G499500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb244640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20683 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13737 |