Basic Information
Locus ID:
CH07.2121
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 29852528 | 29853073 | - | CH07.2121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 18,734.51 Da | 66.24 | 91.82 | 0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 89 | 132 | 1.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 145 | 1.31E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 137 | 1.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 90 | 131 | 1.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 90 | 132 | 12.1057 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 1.07E-14 |
| RefSeq | XP_034603393.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 1.83E-36 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 1.56E-19 | |
| TrEMBL | A0A4U6WAY3 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G201000v2 PE=4 SV=1 | 1.11E-37 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology