Basic Information
Locus ID:
CH07.2120
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase EL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 29849504 | 29850040 | - | CH07.2120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 18,800.53 Da | 76.86 | 78.60 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 93 | 130 | 1.0E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 141 | 1.94E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 138 | 2.2E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 93 | 130 | 8.683004 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09120.1 | RING/U-box superfamily protein. | 1.17E-11 |
| RefSeq | XP_025827852.1 | E3 ubiquitin-protein ligase EL5-like [Panicum hallii] | 6.11E-30 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 3.72E-18 | |
| TrEMBL | K3YYL8 | RING-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 1.23E-37 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology