Basic Information
Locus ID:
CH07.1931
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 27817167 | 27827303 | - | CH07.1931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 131,988.11 Da | 62.25 | 62.56 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 402 | 431 | 1.57E-5 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 336 | 375 | 2.97E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 347 | 442 | 1.3E-8 | - |
| SMART | SM00343 | c2hcfinal6 | 414 | 430 | 0.012 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 354 | 370 | 0.036 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 415 | 430 | 9.685684 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 902 | 954 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 193 | - | - |
| Coils | Coil | Coil | 256 | 283 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039780686.1 | uncharacterized protein LOC120647957 [Panicum virgatum] | 5.15E-51 |
| TrEMBL | A0A3L6RI10 | CCHC-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G17720 PE=4 SV=1 | 1.52E-103 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH03.1681, BH02.1694, BH03.321, BH04.871, BH07.2625 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0221350, gene-QOZ80_3BG0267940 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G007240, Oco10G013850, Oco11G010490, Oco19G003500 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_06G044000, gene-BS78_08G060500, gene-BS78_K024200 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G030640, Chr01G034250, Chr03G009660, Chr05G004500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb384270_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1295, nbis-gene-27399, nbis-gene-33913 ... |