halophFGD

Basic Information

Locus ID: CH07.1920

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH07	27771441	27775462	+	CH07.1920

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.53	88,246.51 Da	60.59	61.91	-0.70

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	314	646	6.12226E-39	-
Pfam	PF00400	WD domain, G-beta repeat	433	469	9.4E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	316	349	3.3E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	474	511	1.6E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	609	645	0.019	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	311	651	5.23E-57	IPR036322
Gene3D	G3DSA:2.130.10.10	-	274	385	1.8E-12	IPR015943
Gene3D	G3DSA:2.130.10.10	-	418	685	4.7E-49	IPR015943
SMART	SM00320	WD40_4	513	552	0.79	IPR001680
SMART	SM00320	WD40_4	431	469	1.6E-8	IPR001680
SMART	SM00320	WD40_4	605	646	0.017	IPR001680
SMART	SM00320	WD40_4	472	511	3.1E-10	IPR001680
SMART	SM00320	WD40_4	561	604	71.0	IPR001680
SMART	SM00320	WD40_4	311	350	8.7E-8	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	318	359	14.886235	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	438	478	14.78598	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	438	472	11.154684	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	318	355	11.919224	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	478	513	10.521959	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	478	513	12.647216	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	337	351	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	456	470	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	337	351	1.1E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	498	512	1.1E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	456	470	1.1E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	82	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	216	230	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	258	294	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	216	241	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	259	281	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	689	762	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	99	173	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	116	141	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	56	71	-	-
Coils	Coil	Coil	261	281	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K20241 (WD repeat-containing protein 44)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G54200.1	Transducin/WD40 repeat-like superfamily protein.	1.9E-196
RefSeq	XP_004960064.1	WD repeat-containing protein 44 [Setaria italica]	0
Swiss-Prot	Q498F0	WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1	1.82E-53
TrEMBL	A0A1E5VN20	WD repeat-containing protein 44 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0012464 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	13	jg10272, jg14869, jg17167, jg2164, jg22490, jg24462, jg32560 ... jg33916, jg37376, jg37526, jg38300, jg39640, jg7483
Aizoaceae	Mesembryanthemum crystallinum	7	gene_12439, gene_14642, gene_16254, gene_18313, gene_23517 ... gene_25228, gene_4988
Amaranthaceae	Atriplex hortensis	7	Ah002407, Ah003957, Ah008231, Ah018577, Ah022822, Ah027133 ... Ah028264
Amaranthaceae	Beta vulgaris	6	BVRB_1g002720, BVRB_3g051500, BVRB_4g087600, BVRB_5g103590 ... BVRB_5g110220, BVRB_6g133050
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg13395, Sbi_jg15034, Sbi_jg18714, Sbi_jg24102 ... Sbi_jg31813, Sbi_jg37154, Sbi_jg3907, Sbi_jg49131, Sbi_jg52453, Sbi_jg55848, Sbi_jg57512, Sbi_jg7942
Amaranthaceae	Salicornia europaea	6	Seu_jg12094, Seu_jg25191, Seu_jg26345, Seu_jg4976 ... Seu_jg6110, Seu_jg9390
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000614, GOSA_00006921, GOSA_00010698, GOSA_00013400 ... GOSA_00017792, GOSA_00026615
Amaranthaceae	Suaeda glauca	17	Sgl00258, Sgl01284, Sgl05311, Sgl06366, Sgl10871, Sgl10872 ... Sgl16224, Sgl16225, Sgl23056, Sgl28170, Sgl33730, Sgl39041, Sgl52307, Sgl54107, Sgl57573, Sgl57584, Sgl59434
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000001036, gene:ENSEOMG00000001787 ... gene:ENSEOMG00000004242, gene:ENSEOMG00000007389, gene:ENSEOMG00000009821, gene:ENSEOMG00000013372, gene:ENSEOMG00000024448, gene:ENSEOMG00000027643, gene:ENSEOMG00000030152, gene:ENSEOMG00000035187, gene:ENSEOMG00000042682, gene:ENSEOMG00000043753, gene:ENSEOMG00000049335
Amaranthaceae	Chenopodium quinoa	11	CQ.Regalona.r1.1AG0004840, CQ.Regalona.r1.2BG0026520 ... CQ.Regalona.r1.3AG0005530, CQ.Regalona.r1.3BG0005580, CQ.Regalona.r1.4AG0020140, CQ.Regalona.r1.4BG0020830, CQ.Regalona.r1.5AG0005200, CQ.Regalona.r1.5AG0013680, CQ.Regalona.r1.5BG0005590, CQ.Regalona.r1.5BG0014260, CQ.Regalona.r1.6AG0022410
Anacardiaceae	Pistacia vera	5	pistato.v30006060, pistato.v30110460, pistato.v30133660 ... pistato.v30160780, pistato.v30165200
Apiaceae	Apium graveolens	9	Ag10G01943, Ag10G02502, Ag11G03138, Ag11G04685, Ag3G01187 ... Ag4G02640, Ag6G01566, Ag7G02216, AgUnG00246
Arecaceae	Cocos nucifera	7	COCNU_07G006800, COCNU_07G012660, COCNU_08G006570 ... COCNU_09G006920, COCNU_10G005100, COCNU_10G010590, COCNU_15G001140
Arecaceae	Phoenix dactylifera	10	gene-LOC103695450, gene-LOC103695765, gene-LOC103696270 ... gene-LOC103696321, gene-LOC103697373, gene-LOC103707690, gene-LOC103707703, gene-LOC103716318, gene-LOC103716714, gene-LOC120108677
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1177.V1.1, AsparagusV1_01.952.V1.1 ... AsparagusV1_04.3420.V1.1, AsparagusV1_07.2137.V1.1, AsparagusV1_09.144.V1.1
Asteraceae	Flaveria trinervia	9	Ftri12G32657, Ftri13G25869, Ftri14G06338, Ftri15G02541 ... Ftri15G09953, Ftri2G31146, Ftri3G08771, Ftri3G09758, Ftri4G31071
Brassicaceae	Arabidopsis thaliana	9	AT1G48870.1, AT1G64610.1, AT2G37670.1, AT3G15470.1 ... AT5G02430.1, AT5G24320.2, AT5G42010.1, AT5G53500.1, AT5G54200.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10003733m.g.v1.0, Thhalv10011035m.g.v1.0 ... Thhalv10011347m.g.v1.0, Thhalv10012625m.g.v1.0, Thhalv10012916m.g.v1.0, Thhalv10016206m.g.v1.0, Thhalv10020024m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g35780.v2.2, Sp2g00110.v2.2, Sp2g23000.v2.2 ... Sp3g13720.v2.2, Sp4g20040.v2.2, Sp6g15640.v2.2, Sp6g16260.v2.2, Sp7g00110.v2.2, Sp7g08760.v2.2
Brassicaceae	Brassica nigra	14	BniB01g007090.2N, BniB01g049490.2N, BniB02g031820.2N ... BniB02g032700.2N, BniB02g077220.2N, BniB04g023150.2N, BniB04g061790.2N, BniB05g031200.2N, BniB05g033360.2N, BniB06g005500.2N, BniB06g058910.2N, BniB08g000680.2N, BniB08g016130.2N, BniB08g016590.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1090, Ceq03G0621, Ceq06G1891, Ceq08G1165, Ceq09G1644
Casuarinaceae	Casuarina glauca	6	Cgl01G1267, Cgl03G0711, Cgl03G0715, Cgl06G1966, Cgl08G1195 ... Cgl09G1778
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno02g09270, gene.Cymno04g07370, gene.Cymno10g01780 ... gene.Cymno10g10360, gene.Cymno14g02420, gene.Cymno14g04870
Dunaliellaceae	Dunaliella salina	1	Dusal.0329s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	11	gene.Thate01g06360, gene.Thate02g22810, gene.Thate02g28900 ... gene.Thate02g28910, gene.Thate03g08820, gene.Thate03g09140, gene.Thate07g00810, gene.Thate07g09310, gene.Thate08g05300, gene.Thate08g17940, gene.Thate08g23260
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-2155, nbisL1-mrna-2837, nbisL1-mrna-2838 ... nbisL1-mrna-8644, nbisL1-mrna-9183
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.1240, evm.TU.LG02.844, evm.TU.LG04.672 ... evm.TU.LG05.1187, evm.TU.LG05.1645, evm.TU.LG10.1585
Plantaginaceae	Plantago ovata	8	Pov_00003208, Pov_00003341, Pov_00009066, Pov_00011306 ... Pov_00020507, Pov_00031394, Pov_00031408, Pov_00041177
Plumbaginaceae	Limonium bicolor	11	Lb0G37621, Lb1G04133, Lb1G04134, Lb2G09110, Lb2G09115 ... Lb2G09116, Lb2G12384, Lb3G21032, Lb4G24694, Lb5G27321, Lb5G27740
Poaceae	Echinochloa crus-galli	26	AH01.5070, AH02.13, AH04.564, AH05.343, AH07.2114, AH09.1956 ... AH09.2714, AH09.956, BH01.5205, BH04.597, BH05.397, BH07.2072, BH09.1029, BH09.1030, BH09.1857, BH09.2124, BH09.2955, CH04.606, CH05.454, CH07.1920, CH07.1972, CH07.2631, CH09.1160, CH09.1990, CH09.2268, Contig786.18
Poaceae	Eleusine coracana subsp. coracana	16	gene-QOZ80_2AG0138710, gene-QOZ80_2BG0188730 ... gene-QOZ80_2BG0194380, gene-QOZ80_3AG0231020, gene-QOZ80_3BG0296810, gene-QOZ80_4AG0299320, gene-QOZ80_4AG0307090, gene-QOZ80_4AG0309700, gene-QOZ80_4AG0323940, gene-QOZ80_4BG0330010, gene-QOZ80_4BG0338130, gene-QOZ80_4BG0340880, gene-QOZ80_5AG0383670, gene-QOZ80_5BG0430490, gene-QOZ80_9AG0670310, gene-QOZ80_9BG0693680
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0167400.1, HORVU.MOREX.r3.2HG0183710.1 ... HORVU.MOREX.r3.2HG0187610.1, HORVU.MOREX.r3.2HG0209640.1, HORVU.MOREX.r3.4HG0347190.1, HORVU.MOREX.r3.4HG0414210.1, HORVU.MOREX.r3.5HG0455820.1, HORVU.MOREX.r3.6HG0598100.1
Poaceae	Lolium multiflorum	9	gene-QYE76_016449, gene-QYE76_023915, gene-QYE76_042997 ... gene-QYE76_043928, gene-QYE76_045629, gene-QYE76_047560, gene-QYE76_064505, gene-QYE76_071461, gene-QYE76_071482
Poaceae	Oryza coarctata	17	Oco03G011920, Oco03G016300, Oco04G012350, Oco04G017040 ... Oco05G000910, Oco06G000880, Oco07G005460, Oco07G011250, Oco07G013390, Oco07G019330, Oco08G005520, Oco08G010990, Oco08G012940, Oco08G018600, Oco21G002660, Oco22G003430, Oco23G003030
Poaceae	Oryza sativa	11	LOC_Os02g33630.1, LOC_Os02g42590.1, LOC_Os02g53890.1 ... LOC_Os03g02440.1, LOC_Os04g34080.1, LOC_Os04g44700.1, LOC_Os04g48010.2, LOC_Os04g58180.1, LOC_Os07g49090.1, LOC_Os11g08400.1, LOC_Os12g07874.1
Poaceae	Paspalum vaginatum	9	gene-BS78_01G507000, gene-BS78_04G155800 ... gene-BS78_04G207600, gene-BS78_05G094500, gene-BS78_06G090100, gene-BS78_06G167600, gene-BS78_06G203100, gene-BS78_06G284400, gene-BS78_08G049500
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0100720, Pt_Chr0100807, Pt_Chr0204064, Pt_Chr0207544 ... Pt_Chr0300093, Pt_Chr0301626, Pt_Chr0301976, Pt_Chr0302735, Pt_Chr0302776, Pt_Chr0307125, Pt_Chr0307357
Poaceae	Sporobolus alterniflorus	36	Chr01G025530, Chr01G038830, Chr04G006460, Chr04G023380 ... Chr06G025220, Chr07G005170, Chr07G020050, Chr07G020060, Chr09G014880, Chr09G025070, Chr11G013150, Chr12G000550, Chr13G006530, Chr13G010890, Chr19G012890, Chr23G000820, Chr23G006320, Chr23G008170, Chr23G013370, Chr23G016690, Chr23G016700, Chr25G000630, Chr25G005250, Chr25G006710, Chr25G011500, Chr26G003130, Chr26G006320, Chr26G011540, Chr26G013180, Chr26G018470, Chr27G003010, Chr30G000670, Chr30G005110, Chr30G006610, Chr30G011120, Chr31G002050
Poaceae	Thinopyrum elongatum	8	Tel2E01G528200, Tel2E01G644100, Tel2E01G687700 ... Tel2E01G963600, Tel4E01G157400, Tel4E01G589100, Tel5E01G219700, Tel6E01G448000
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG043200, gene_TRIDC2AG054030 ... gene_TRIDC2AG058080, gene_TRIDC2AG077380, gene_TRIDC2BG046050, gene_TRIDC2BG056760, gene_TRIDC2BG061000, gene_TRIDC2BG085830, gene_TRIDC4AG034370, gene_TRIDC4BG015440, gene_TRIDC4BG060140, gene_TRIDC5AG018770, gene_TRIDC5AG074880, gene_TRIDC5BG020990, gene_TRIDC6AG036290, gene_TRIDC6BG043140
Poaceae	Triticum aestivum	24	TraesCS2A02G298200.1, TraesCS2A02G373500.2 ... TraesCS2A02G402000.1, TraesCS2A02G591500.1, TraesCS2B02G314700.1, TraesCS2B02G390600.2, TraesCS2B02G420100.1, TraesCS2B02G592200.1, TraesCS2D02G296300.1, TraesCS2D02G369700.1, TraesCS2D02G399400.1, TraesCS2D02G562800.1, TraesCS4A02G221200.1, TraesCS4B02G099600.1, TraesCS4B02G359300.1, TraesCS4D02G095600.1, TraesCS4D02G352900.1, TraesCS5A02G114500.1, TraesCS5A02G528200.1, TraesCS5B02G120700.1, TraesCS5D02G124900.1, TraesCS6A02G235200.1, TraesCS6B02G263900.1, TraesCS6D02G217900.1
Poaceae	Zea mays	20	Zm00001eb001040_P001, Zm00001eb015580_P001 ... Zm00001eb055480_P001, Zm00001eb066110_P001, Zm00001eb073740_P001, Zm00001eb075850_P001, Zm00001eb083450_P002, Zm00001eb099060_P001, Zm00001eb125800_P001, Zm00001eb185690_P003, Zm00001eb201360_P003, Zm00001eb243200_P003, Zm00001eb248440_P005, Zm00001eb297920_P001, Zm00001eb333770_P001, Zm00001eb341300_P001, Zm00001eb408270_P002, Zm00001eb422140_P001, Zm00001eb427140_P002, Zm00001eb433820_P003
Poaceae	Zoysia japonica	13	nbis-gene-15000, nbis-gene-22580, nbis-gene-27229 ... nbis-gene-3158, nbis-gene-37148, nbis-gene-4743, nbis-gene-5347, nbis-gene-5584, nbis-gene-56367, nbis-gene-6202, nbis-gene-7703, nbis-gene-8164, nbis-gene-9369
Poaceae	Zoysia macrostachya	14	Zma_g13974, Zma_g16434, Zma_g18527, Zma_g20098, Zma_g20255 ... Zma_g21021, Zma_g21260, Zma_g21668, Zma_g21802, Zma_g22231, Zma_g2245, Zma_g24833, Zma_g24835, Zma_g4583
Portulacaceae	Portulaca oleracea	19	evm.TU.LG01.1573, evm.TU.LG01.2104, evm.TU.LG02.692 ... evm.TU.LG03.2451, evm.TU.LG04.2128, evm.TU.LG04.2673, evm.TU.LG04.3575, evm.TU.LG06.188, evm.TU.LG07.86, evm.TU.LG08.298, evm.TU.LG09.1858, evm.TU.LG11.1700, evm.TU.LG14.1277, evm.TU.LG14.826, evm.TU.LG16.9, evm.TU.LG17.1497, evm.TU.LG19.1301, evm.TU.LG22.976, evm.TU.LG24.1295
Posidoniaceae	Posidonia oceanica	7	gene.Posoc01g19640, gene.Posoc02g10200, gene.Posoc02g14790 ... gene.Posoc04g15870, gene.Posoc05g21180, gene.Posoc06g04160, gene.Posoc06g11380
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_14_RagTag.57, evm.TU.Scaffold_16_RagTag.47 ... evm.TU.Scaffold_17_RagTag.549, evm.TU.Scaffold_1_RagTag.1670, evm.TU.Scaffold_1_RagTag.638, evm.TU.Scaffold_2_RagTag.754, evm.TU.Scaffold_3_RagTag.1003
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-1093, nbisL1-mrna-11200, nbisL1-mrna-22128 ... nbisL1-mrna-22211, nbisL1-mrna-22296, nbisL1-mrna-7441
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-15092, nbisL1-mrna-3568, nbisL1-mrna-4340 ... nbisL1-mrna-901, nbisL1-mrna-9593, nbisL1-mrna-9690
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-10598, nbisL1-mrna-20437, nbisL1-mrna-2279 ... nbisL1-mrna-3810, nbisL1-mrna-5683, nbisL1-mrna-8661
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000006l.123, evm.TU.utg000007l.362 ... evm.TU.utg000009l.1097, evm.TU.utg000012l.421, evm.TU.utg000016l.614, evm.TU.utg000019l.638, evm.TU.utg000022l.468
Rhizophoraceae	Kandelia obovata	6	Maker00002205, Maker00005396, Maker00011013, Maker00013286 ... Maker00014234, Maker00018398
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-12700, nbisL1-mrna-15023, nbisL1-mrna-15939 ... nbisL1-mrna-3608, nbisL1-mrna-8376
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-11034, nbisL1-mrna-1704, nbisL1-mrna-5960 ... nbisL1-mrna-6800, nbisL1-mrna-7108, nbisL1-mrna-785
Salicaceae	Populus euphratica	10	populus_peu00483, populus_peu03735, populus_peu11286 ... populus_peu13607, populus_peu17545, populus_peu22771, populus_peu27991, populus_peu29443, populus_peu31529, populus_peu34581
Solanaceae	Lycium barbarum	9	gene-LOC132605333, gene-LOC132609951, gene-LOC132614441 ... gene-LOC132617149, gene-LOC132628725, gene-LOC132630307, gene-LOC132632112, gene-LOC132634732, gene-LOC132639722
Solanaceae	Solanum chilense	9	SOLCI001724000, SOLCI002800100, SOLCI002997800 ... SOLCI003126600, SOLCI004764200, SOLCI005045900, SOLCI006682600, SOLCI006780600, SOLCI007204100
Solanaceae	Solanum pennellii	9	gene-LOC107002403, gene-LOC107002745, gene-LOC107005033 ... gene-LOC107015292, gene-LOC107021101, gene-LOC107026291, gene-LOC107026666, gene-LOC107028880, gene-LOC107029852
Tamaricaceae	Reaumuria soongarica	5	STRG.3255_chr01_+, STRG.6147_chr04_+, gene_10306, gene_5420 ... gene_6814
Tamaricaceae	Tamarix chinensis	19	TC02G1733, TC02G2500, TC03G0756, TC03G2903, TC04G0445 ... TC04G0492, TC04G0494, TC04G1790, TC04G2856, TC05G1121, TC06G2660, TC07G0249, TC07G0488, TC07G0660, TC07G1139, TC08G1162, TC08G1310, TC09G2349, TC11G0521
Zosteraceae	Zostera marina	10	Zosma01g21370.v3.1, Zosma01g35910.v3.1, Zosma01g40080.v3.1 ... Zosma02g01650.v3.1, Zosma02g01690.v3.1, Zosma02g01720.v3.1, Zosma03g28430.v3.1, Zosma05g24020.v3.1, Zosma05g33920.v3.1, Zosma06g29090.v3.1