Basic Information
Locus ID:
CH07.1914
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 27652600 | 27653910 | - | CH07.1914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 46,838.42 Da | 52.65 | 97.43 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 22 | 64 | 5.00144E-24 | - |
| Pfam | PF04564 | U-box domain | 18 | 92 | 1.2E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 209 | 401 | 2.76E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 97 | 3.1E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 119 | 417 | 5.6E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 96 | 4.4E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 21 | 87 | 2.9E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 17 | 94 | 37.684448 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 187 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 8.44E-114 |
| RefSeq | XP_025792292.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum hallii] | 1.09E-253 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 8.13E-113 | |
| TrEMBL | A0A1E5W351 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007158 PE=4 SV=1 | 1.39E-254 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology