Basic Information
Locus ID:
CH07.1822
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 26564747 | 26565988 | - | CH07.1822 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 43,910.10 Da | 41.66 | 77.12 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 241 | 0.095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 347 | 0.042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 70 | 351 | 1.08E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 35 | 413 | 5.4E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 203 | 241 | 4.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 347 | 9.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 200 | 0.44 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 250 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 350 | 9.97376 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 334 | 348 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 1.72E-188 |
| RefSeq | XP_012698689.1 | LOW QUALITY PROTEIN: WD repeat-containing protein LWD1-like [Setaria italica] | 7.49E-254 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 1.65E-187 | |
| TrEMBL | A0A2T7F718 | WD_REPEATS_REGION domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G245000 PE=4 SV=1 | 1.3E-253 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology