Basic Information
Locus ID:
CH07.1785
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 26080636 | 26086584 | - | CH07.1785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 92,401.91 Da | 56.14 | 65.60 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16536 | RING-HC_RNF10 | 337 | 384 | 1.51626E-22 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 337 | 383 | 4.8E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 325 | 390 | 9.9E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 329 | 398 | 1.0E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 337 | 383 | 9.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 337 | 383 | 11.191014 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 352 | 361 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 838 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 142 | - | - |
| Coils | Coil | Coil | 672 | 697 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26730.1 | RING/U-box superfamily protein. | 4.28E-173 |
| RefSeq | XP_034590263.1 | RING finger protein 10 isoform X3 [Setaria viridis] | 0 |
| Q32NQ8 | E3 ubiquitin-protein ligase RNF10 OS=Xenopus laevis OX=8355 GN=rnf10 PE=2 SV=1 | 2.85E-55 | |
| TrEMBL | K3YQ90 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101755446 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19909 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24975 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012652 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g151930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42435, Sbi_jg45041 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27113 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002265 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31839, Sgl37117 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001974, gene:ENSEOMG00000003663 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0008720, CQ.Regalona.r1.6BG0009470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30021320 |
| Apiaceae | Apium graveolens | 1 | Ag4G00614 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005670 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708052 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1495.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA10901 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G26730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003691m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g15850.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g007800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0041 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0042 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g03050 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1048s00002.v1.0, Dusal.2216s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g10400 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024325 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G22340, Lb4G22345, Lb4G22558 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.1944, BH07.1919, CH07.1785 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0187570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0461110.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022591, gene-QYE76_022592 |
| Poaceae | Oryza coarctata | 2 | Oco03G011020, Oco04G011460 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g31150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G145400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201727 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G011100, Chr13G011730, Chr15G012670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G238100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG022080, gene_TRIDC5BG023760-28909 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G135100.1, TraesCS5B02G133900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb242020_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20896 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13577 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2237, evm.TU.LG17.1289 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g14250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.236 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14185, nbisL1-mrna-27478 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3054 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14328 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.220 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009994 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18976 |
| Salicaceae | Populus euphratica | 1 | populus_peu27095 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623999 |
| Solanaceae | Solanum chilense | 1 | SOLCI000001100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010829 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13974_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3393 |
| Zosteraceae | Zostera marina | 1 | Zosma05g09250.v3.1 |