Basic Information
Locus ID:
CH07.165
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 1378557 | 1381546 | - | CH07.165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 73,150.45 Da | 37.61 | 78.27 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 321 | 0.046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 577 | 614 | 6.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 295 | 657 | 1.77E-28 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 96 | 380 | 2.75E-9 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 284 | 412 | 1.4E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 413 | 656 | 8.4E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 574 | 615 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 571 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 0.61 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 5.33E-56 |
| RefSeq | XP_021309305.1 | autophagy-related protein 18a [Sorghum bicolor] | 5.05E-104 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 5.17E-55 | |
| TrEMBL | A0A835FG51 | WD_REPEATS_REGION domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_011585 PE=4 SV=1 | 7.52E-147 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology