Basic Information
Locus ID:
CH07.1556
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 22007096 | 22011830 | + | CH07.1556 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 33,354.41 Da | 40.88 | 78.49 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 77 | 154 | 6.15442E-39 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 71 | 154 | 4.3E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 64 | 166 | 1.96E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 56 | 176 | 3.0E-28 | IPR036431 |
| SMART | SM00501 | bright_3 | 68 | 159 | 5.3E-27 | IPR001606 |
| SMART | SM01014 | ARID_2 | 64 | 154 | 3.7E-25 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 67 | 158 | 25.661951 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 202 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 1.43E-34 |
| RefSeq | XP_002453801.1 | high mobility group B protein 15 [Sorghum bicolor] | 1.66E-106 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 1.41E-33 | |
| TrEMBL | A0A2T7F5Q4 | ARID domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G166500 PE=4 SV=1 | 1.89E-106 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology