Basic Information
Locus ID:
CH07.1553
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 21981352 | 21981896 | - | CH07.1553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 16,492.60 Da | 54.30 | 51.02 | -1.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 1 | 33 | 7.41513E-9 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 1 | 36 | 9.3E-8 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 1 | 48 | 1.28E-10 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 1 | 44 | 1.5E-9 | IPR036910 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 1 | 36 | 10.878462 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 147 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 3.58E-15 |
| RefSeq | XP_025809830.1 | high mobility group B protein 15-like [Panicum hallii] | 2.87E-85 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 3.55E-14 | |
| TrEMBL | A0A1E5UVR6 | High mobility group B protein 15 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0021949 PE=4 SV=1 | 8.34E-88 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology