Basic Information
Locus ID:
CH07.1524
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Probably involved in membrane trafficking
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH07 | 21067239 | 21076253 | + | CH07.1524 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 68,935.31 Da | 72.18 | 69.02 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04144 | SCAMP family | 421 | 472 | 1.3E-7 | IPR007273 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 53 | - | - |
| Coils | Coil | Coil | 185 | 212 | - | - |
| Coils | Coil | Coil | 103 | 130 | - | - |
| Coils | Coil | Coil | 499 | 519 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28450.1 | nucleotide binding;protein binding. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 5.66E-17 |
| RefSeq | XP_025800677.1 | protein ALP1-like [Panicum hallii] | 1.09E-34 |
| Q0JAI9 | Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP6 PE=2 SV=1 | 7.92E-18 | |
| TrEMBL | A0A2T7DXU9 | Myb_DNA-bind_3 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G122200 PE=4 SV=1 | 1.24E-52 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g058380.2N |
| Poaceae | Echinochloa crus-galli | 24 | AH01.4755, AH02.2722, AH04.1015, AH05.1286, AH05.1766 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0063290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0136190.1 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g46770.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_01G057300, gene-BS78_02G211300, gene-BS78_K021000 ... |
| Poaceae | Sporobolus alterniflorus | 18 | Chr01G028140, Chr02G020120, Chr02G020680, Chr03G014060 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G440600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG030720, gene_TRIDC2AG037920 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009750_P001, Zm00001eb012990_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21483 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10439 |